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NIfTI-MRS: A standard data format for magnetic resonance spectroscopy.
Clarke WT, Bell TK, Emir UE, Mikkelsen M, Oeltzschner G, Shamaei A, Soher BJ, Wilson M. Clarke WT, et al. Magn Reson Med. 2022 Dec;88(6):2358-2370. doi: 10.1002/mrm.29418. Epub 2022 Sep 11. Magn Reson Med. 2022. PMID: 36089825 Free PMC article.
A detailed description of the specification is provided. An open-source command-line conversion program is implemented to convert single-voxel and spectroscopic imaging data to NIfTI-MRS. ...Code examples of NIfTI-MRS readers are implemented in common programming …
A detailed description of the specification is provided. An open-source command-line conversion program is implemented to conv …
From frames to OWL2: Converting the Foundational Model of Anatomy.
Detwiler LT, Mejino JLV, Brinkley JF. Detwiler LT, et al. Artif Intell Med. 2016 May;69:12-21. doi: 10.1016/j.artmed.2016.04.003. Epub 2016 Apr 27. Artif Intell Med. 2016. PMID: 27235801 Free PMC article.
Prior to this work, the FMA was developed in a knowledge modeling language known as Protege Frames. Frames is an intuitive representational language, but is no longer the industry standard. ...Prior to the post-conversion cleanup 73% of the more than 100,000 …
Prior to this work, the FMA was developed in a knowledge modeling language known as Protege Frames. Frames is an intuitive representa …
Programming of Industrial Robots Using a Laser Tracker.
Szybicki D, Obal P, Kurc K, Gierlak P. Szybicki D, et al. Sensors (Basel). 2022 Aug 27;22(17):6464. doi: 10.3390/s22176464. Sensors (Basel). 2022. PMID: 36080923 Free PMC article.
The developed method is based on the accuracy of robots and the conversion of the position and orientation of individual coordinate systems. ...The algorithm, which is the most important part of the developed method, has been implemented in the Rapid programming …
The developed method is based on the accuracy of robots and the conversion of the position and orientation of individual coordinate s …
TOPP--the OpenMS proteomics pipeline.
Kohlbacher O, Reinert K, Gröpl C, Lange E, Pfeifer N, Schulz-Trieglaff O, Sturm M. Kohlbacher O, et al. Bioinformatics. 2007 Jan 15;23(2):e191-7. doi: 10.1093/bioinformatics/btl299. Bioinformatics. 2007. PMID: 17237091
These applications range from useful utilities (file format conversion, peak picking) over wrapper applications for known applications (e.g. Mascot) to completely new algorithmic techniques for data reduction and data analysis. We anticipate that TOPP will greatly f …
These applications range from useful utilities (file format conversion, peak picking) over wrapper applications for known application …
On the assessment of bioequivalence in a two-period cross-over design.
Wijnand HP. Wijnand HP. Comput Methods Programs Biomed. 1992 Mar;37(2):151-7. doi: 10.1016/0169-2607(92)90097-q. Comput Methods Programs Biomed. 1992. PMID: 1643857
For larger study sizes, conversion to a more powerful programming language capable of handling large three-dimensional arrays, is mandatory. An alternative algorithm, allowing large sample sizes to be analysed nonparametrically without program …
For larger study sizes, conversion to a more powerful programming language capable of handling large three-dimensional …
vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration.
Dolin RH, Gothi SR, Boxwala A, Heale BSE, Husami A, Jones J, Khangar H, Londhe S, Naeymi-Rad F, Rao S, Rapchak B, Shalaby J, Suraj V, Xie N, Chamala S, Alterovitz G. Dolin RH, et al. BMC Bioinformatics. 2021 Mar 2;22(1):104. doi: 10.1186/s12859-021-04039-1. BMC Bioinformatics. 2021. PMID: 33653260 Free PMC article.
RESULTS: vcf2fhir converts VCF variants into a FHIR Genomics Diagnostic Report. Conversion translates each VCF row into a corresponding FHIR-formatted variant in the generated report. ...Conversion can be limited to a subset of VCF by supplying genomic coordinates o …
RESULTS: vcf2fhir converts VCF variants into a FHIR Genomics Diagnostic Report. Conversion translates each VCF row into a correspondi …
Open Babel: An open chemical toolbox.
O'Boyle NM, Banck M, James CA, Morley C, Vandermeersch T, Hutchison GR. O'Boyle NM, et al. J Cheminform. 2011 Oct 7;3:33. doi: 10.1186/1758-2946-3-33. J Cheminform. 2011. PMID: 21982300 Free PMC article.
RESULTS: We discuss, for the first time, Open Babel, an open-source chemical toolbox that speaks the many languages of chemical data. Open Babel version 2.3 interconverts over 110 formats. ...In addition, it provides a variety of useful utilities from conformer searching a …
RESULTS: We discuss, for the first time, Open Babel, an open-source chemical toolbox that speaks the many languages of chemical data. …
MZA: A Data Conversion Tool to Facilitate Software Development and Artificial Intelligence Research in Multidimensional Mass Spectrometry.
Bilbao A, Ross DH, Lee JY, Donor MT, Williams SM, Zhu Y, Ibrahim YM, Smith RD, Zheng X. Bilbao A, et al. J Proteome Res. 2023 Feb 3;22(2):508-513. doi: 10.1021/acs.jproteome.2c00313. Epub 2022 Nov 22. J Proteome Res. 2023. PMID: 36414245 Free PMC article.
We present MZA (pronounced m-za), the mass-to-charge (m/z) generic data storage and access tool designed to facilitate software development and artificial intelligence research in multidimensional mass spectrometry measurements. Composed of a data conversion tool and a sim …
We present MZA (pronounced m-za), the mass-to-charge (m/z) generic data storage and access tool designed to facilitate software development …
The field representation language.
Tsafnat G. Tsafnat G. J Biomed Inform. 2008 Feb;41(1):46-57. doi: 10.1016/j.jbi.2007.03.001. Epub 2007 Apr 2. J Biomed Inform. 2008. PMID: 17434811 Free article.
This paper presents the Field Representation Language (FRL), a portable representation of values that change over space and/or time. FRL is an extensible mark-up language (XML) derivative with support for large numeric data sets in Hierarchical Data Format version 5 …
This paper presents the Field Representation Language (FRL), a portable representation of values that change over space and/or time. …
Development of a novel drug information provision system for Kampo medicine using natural language processing technology.
Maeda-Minami A, Yoshino T, Yumoto T, Sato K, Sagara A, Inaba K, Kominato H, Kimura T, Takishita T, Watanabe G, Nakamura T, Mano Y, Horiba Y, Watanabe K, Kamei J. Maeda-Minami A, et al. BMC Med Inform Decis Mak. 2023 Jul 13;23(1):119. doi: 10.1186/s12911-023-02230-3. BMC Med Inform Decis Mak. 2023. PMID: 37442993 Free PMC article.
Although a chatbot-style system using machine learning and natural language processing has been used in some clinical settings and proven useful, the system developed specifically for the Japanese language using this method has not been validated by research. ...The …
Although a chatbot-style system using machine learning and natural language processing has been used in some clinical settings and pr …
38 results